| |
|
|
| Registros recuperados : 17 | |
| 2. |  | NOYES, N. R.; ABDO, Z.; ROVIRA, P.J.; DOSTER, E.; YANG, X.; LINKE, L. M.; BURGESS, B. A.; MARTIN. J.; BOUCHER, C.; MORLEY, P. S.; BELK, K. E. A bayesian approach to investigating the effect of metaphylaxis on the microbiome-resistance of the commercial feedlot steers. Abstract. In: Plant and Animal Genome Conference, 24. San Diego, USA, 2016.| Biblioteca(s): INIA Treinta y Tres. |
|    |
| 3. | | NOYES, N.; WEINROTH, M.; LAKIN, S.; DOSTER, E.; RAYMOND, R.; ROVIRA, P.J.; ABDO, Z.; RUIZ, J.; MARTIN, J.; BOUCHER, C.; JONES, K.; BELK, K.E. Comparing the resistome of poultry, swine, cattle and salmon production and nearby human waste water treatment plants. [Abstract]. In: Conference of Research Workers in Animal Diseases, 96th, 2015,Chicago (USA): CRWAD, 2015. p. 127.| Biblioteca(s): INIA Treinta y Tres. |
| |
| 4. | | DOSTER, E.; ROVIRA, P.J.; NOYES, N.R.; BURGESS, B.A.; YANG, X.; WEINROTH, M.; LINKE, L.; MAGNUSON, R.; PABILONIA, K.; BOUCHER, C. Comparing Salmonella enterica detection in feces using aerobic culture, targeted molecular tests, and shotgun metagenomics. In: SYMPOSIUM OF AMERICAN COLLEGE OF VETERINARY INTERNAL MEDICINE, 2017, GREENWOOD VILLAGE, CO, USA. Proceedings of ACVIM 2017, Greenwood Village, CO, USA. p. 338.| Biblioteca(s): INIA Treinta y Tres. |
| |
| 5. | | DOSTER, E.; ROVIRA, P.J.; NOYES, N.R.; BURGESS, B.A.; YANG, X.; WEINROTH, M.D.; LINKE, L.; MAGNUSON, R.; BOUCHER, C.; BELK, K.E.; MORLEY, P.S. A cautionary report for pathogen identification using shotgun metagenomics; a comparison to aerobic culture and polymerase chain reaction for Salmonella enterica identification. Frontier in Microbiology, 2019, 10:2499. doi: 10.3389/fmicb.2019.02499 7 p. Article history: received: 8 July 2019 // Accepted 16 October 2019 // Published 01 November 2019.
Open Access Journal. www.frontiersin.org| Biblioteca(s): INIA Treinta y Tres. |
| |
| 6. | | DOSTER, E.; ROVIRA, P.J.; NOYES, NOELLE R.; BURGESS, B.A.; MAGNUSON, R.; JONES, KENNETH; BOUCHER, C.; RUIZ, JAIME; BELK, K. E. Investigating the effect of tulathromycin exposure on potential microbial community function in feedlot cattle during the early feeding period using shotgun metagenomics. [Abstract]. In: Scientific Annual Research Day, 17. Fort Collins. 2016. Proceedings. Fort Collins: Colorado State University, 2016 p. 18.| Biblioteca(s): INIA Treinta y Tres. |
| |
| 7. | | LAKIN, S.M.; DEAN, C.J.; DETTENWANGER, A.; ROSS, A.; DOSTER, E.; ROVIRA, P.J.; ABDO, Z.; JONES, K.L.; BELK, K.E.; MORLEY, P.S.; BOUCHER, C. MEGaRES and AmrPlusPlus, a comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data.[Abstract]. In: PROCEEDINGS OF THE 96TH ANNUAL CONFERENCE OF RESEARCH WORKERS IN ANIMAL DEISEASES, CHICAGO, USA. 2016. Session Ecology and Management of Foodborne Agents. 065.| Biblioteca(s): INIA Treinta y Tres. |
| |
| 8. | | DOSTER, E.; ROVIRA, P.J.; NOYES, N.; BURGES, B.; YANG, X.; WEINROTH, M.; LINKE, L.; MAGNUSON, R.; JONES, K.; BOUCHER, C.; RUIZ, J.; MORLEY, P.; BELK, K. Shotgun metagenomic detection of Salmonella enterica in feedlot cattle compared to aerobic culture and PCR techniques. [Abstract]. In: Conference of Research Workers in Animal Diseases, 2016. Chicago (USA): En línea| Biblioteca(s): INIA Treinta y Tres. |
| |
| 9. | | ROVIRA, P.J.; MCALLISTER, T.; LAKIN, S.M.; COOK, S.R.; DOSTER, E.; NOYES, N. R.; WEINROTH, M.D.; YANG, X.; PARKER, J. K.; BOUCHER, C.; BOOKER, C. W.; WOENER, D. R.; BELK, K. E.; MORLEY, P. S. Characterization of the microbial resistome in conventional and "raised without antibiotics" beef and dairy production systems. Frontier in Microbiology, September 2019. v. 10, article 1980, 11 p. OPEN ACCESS. Received 18 March 2019 // Accepted 12 August 2019 // Published 4 September 2019.| Biblioteca(s): INIA Treinta y Tres. |
| |
| 10. | | WEINROTH, M.D.; SCOTT, H.M.; NORBY, B.; LONERAGAN, G.H.; NOYES, N.R.; ROVIRA, P.J.; DOSTER, E.; YANG, X.; WOERNER, D.R.; MORLEY, P.S.; BELK, K.E. Effects of ceftiofur and chlortetracycline on the resistomes of feedlot cattle. Applied and Environmental Microbiology, July 2018, vol. 84, no.13, e00610-18. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. Article history: Received 15 March 2018. / Accepted 24 April 2018. / Accepted manuscript posted online 4 May 2018. OPEN ACCESS.| Biblioteca(s): INIA Las Brujas; INIA Treinta y Tres. |
| |
| 11. | | DOSTER, E.; ROVIRA, P.J.; NOYES, N.R.; BURGESS, B. A.; YANG, X.; WEINROTH, M.D.; LAKIN, S.M.; DEAN, C.J.; LINKE, L.; MAGNUSON, R.; JONES, K.I.; BOUCHER, C.; RUIZ, J.; BELK, K.E.; MORLEY, P.S. Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period. Frontier in Microbiology, 2018, 9:1715. 14 p. Article history: Received: 14 April 2018; Accepted: 09 July 2018; Published: 30 July 2018.
Open Access journal.
https://doi.org/10.3389/fmicb.2018.01715| Biblioteca(s): INIA Treinta y Tres. |
| |
| 12. | | LAKIN, S.M.; DEAN, C.; NOYES, N.R.; DETTENWANGER, A.; ROSS, A. S.; DOSTER, E.; ROVIRA, P.J.; ABDO, Z.; JONES, K.L.; RUIZ, J.; BELK, K.E.; MORLEY, P.S.; BOUCHER, C. MEGARes: an antimicrobial resistance database for high throughput sequencing. Nucleic Acids Research, 2017 v.45 p.574-580. Article History: Published online 2016 Nov 24.
DOI: https://doi.org/10.1093/nar/gkw1009| Biblioteca(s): INIA Treinta y Tres. |
| |
| 13. | | NOYES, N.R.; PARKER, J.K.; DEAN, C.J.; RAYMOND, R.A.; WEINROTH, M.E.; ROVIRA, P.J.; DOSTER, E.; ABDO, Z.; MARTIN, J.; JONES, K.L.; RUIZ, J.; BOUCHER, C.A.; BELK, K.E.; MORLEY, P.S. Megarich, a pre-sequencing capture system for enriching and counting resistance genes within metagenomic samples. [Abstract]. In: PROCEEDINGS OF THE 96TH ANNUAL CONFERENCE OF RESEARCH WORKERS IN ANIMAL DEISEASES, CHICAGO, USA. 2016. Session Ecology and Management of Foodborne Agents. - 064.| Biblioteca(s): INIA Treinta y Tres. |
| |
| 14. | | WEINROTH, M.D.; LANKIN, S.M.; NOYES, N.R.; YANG, X.; ROVIRA, P.J.; DOSTER, E.; DEAN, C.; PARKER, J.K.; ANDERSON, C.; ABDO, Z.; BOUCHER, C.; RUIZ, J.; BELK, K.E.; MORLEY, P.S. Metagenomic investigations of antimicrobial resistance in beef, pork, and broiler production systems. [Abstract]. ln: Conference of Research Workers in Animal Disease. (3-5 Dec., 2017, Chicago, Illinois, USA) Presentation Abstracts. Chicago, Illinois (USA): CRWAD, 2017. p. 27.| Biblioteca(s): INIA Treinta y Tres. |
| |
| 15. | | MORLEY, P.; BELK, K.; DOSTER, E.; LAKIN, S.; DEAN, C.; MUGGLI, M.; NOYES, N.; ROVIRA, P.J.; WEINROTH, M.; YANG, X.; ABDO, Z.; BOUCHER, C.; RUIZ, J.; SCOTT, H.M.; VAN METRE, D.C.; WOERNER, D.E. Metagnomic investigations of antimicrobial resitance in food animal populations. In: USDA NIFA Antimicrobial Resistance Program Project. 2017, Florida, USA. p. 14-15| Biblioteca(s): INIA Treinta y Tres. |
| |
| 16. | | DOSTER, E.; ROVIRA, P.J.; NOYES, N. R.; BURGESS, B.A.; YANG, X.; WEINROTH, M.; LINKE, L.; MAGNUSON, R.; JONES, K.; BOUCHER, C.; RUIZ, J.; MORLEY, P.S.; BELK, K.E. Use of shotgun metagenomic to evaluate the microbiome in cattle feces following tulathromycin metaphylaxis. [Abstract]. In: Conference of Research Workers in Animal Diseases, 96th, 2015,Chicago (USA): CRWAD, 2015. p. 128.| Biblioteca(s): INIA Treinta y Tres. |
| |
| 17. | | NOYES, N.R.; WEINROTH, M.E.; PARKER, J.K.; DEAN, C.J.; LAKIN, S.M.; RAYMOND, R.A.; ROVIRA, P.J.; DOSTER, E.; ABDO, Z.; MARTIN, J.N.; JONES, K.L.; RUIZ, J.; BOUCHER, C.A.; BELK, K.E.; MORLEY, P.S. Enrichment allows identification of diverse, rate elements in metagenomic resistome-virulome sequencing. Microbiome, 2017, 5, p. 142 13 p. Article History: Received: 29 May 2017, Accepted: 5 October 2017, Published: 17 October 2017| Biblioteca(s): INIA Treinta y Tres. |
|  |
| Registros recuperados : 17 | |
|
|
|
|
Registro completo
|
|
Biblioteca (s) : |
INIA Treinta y Tres. |
|
Fecha actual : |
31/07/2018 |
|
Actualizado : |
11/10/2019 |
|
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
|
Circulación / Nivel : |
Internacional - -- |
|
Autor : |
DOSTER, E.; ROVIRA, P.J.; NOYES, N.R.; BURGESS, B. A.; YANG, X.; WEINROTH, M.D.; LAKIN, S.M.; DEAN, C.J.; LINKE, L.; MAGNUSON, R.; JONES, K.I.; BOUCHER, C.; RUIZ, J.; BELK, K.E.; MORLEY, P.S. |
|
Afiliación : |
ENRIQUE DOSTER, Microbial Ecology Group, Colorado State University, USA. Department of Microbiology, Inmunology and Pathology, Colorado State University. USA.; PABLO JUAN ROVIRA SANZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. Microbial Ecology Group, Colorado State University. Department of Microbiology, Imnunology and Pathology, Colorado State University, USA.; NOELLE R. NOYES., Microbial Ecology Group, Colorado State University. Department of Veterinary Population Medicine, University of Minnesota.; BRANDY A. BURGESS, Department of Population Health, University of Georgia, USA.; XIANG YANG, Microbial Ecology Group, Colorado State University. Department of Animal Sciences, Colorado State University, USA.; MARGARET D. WEINROTH, Microbial Ecology Group, Colorado State University. Department of Animal Sciences, Colorado State University, USA.; STEVEN M. LAKIN, Microbial Ecology Group, Colorado State University. Department of Microbiology, Immunology and Pathology, Colorado State University, USA.; CHRISTOPHER J. DEAN, Microbial Ecology Group, Colorado State University. Department of Microbiology, Immunology and Pathology, Colorado State University, USA.; LYNDSEY LINKE, Department of Clinical Sciences, Colorado State University, USA.; ROBERTA MAGNUSON, Department of Clinical Sciences, Colorado State University, USA.; KENNETH I. JONES, Department of Biochemistry and Molecular Genetics, University of Colorado, USA.; CHRISTINA BOUCHER, Department of Computer and Information Science and Engineering, University of Florida, USA.; JAMIE RUIZ, Department of Computer and Information Science and Engineering, University of Florida, USA.; KEITH E. BELK, Microbial Ecology Group, Colorado State University. Department of Microbiology, Imnunology and Pathology, Colorado State University, USA.; PAUL S. MORLEY, Microbial Ecology Group, Colorado State University, USA. Department of Microbiology, Inmunology and Pathology, Colorado State University. USA. |
|
Título : |
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period. |
|
Fecha de publicación : |
2018 |
|
Fuente / Imprenta : |
Frontier in Microbiology, 2018, 9:1715. |
|
Páginas : |
14 p. |
|
DOI : |
10.3389/fmicb.2018.01715 |
|
Idioma : |
Inglés |
|
Notas : |
Article history: Received: 14 April 2018; Accepted: 09 July 2018; Published: 30 July 2018.
Open Access journal.
https://doi.org/10.3389/fmicb.2018.01715 |
|
Contenido : |
The objective was to examine effects of treating commercial beef feedlot cattle with therapeutic doses of tulathromycin, a macrolide antimicrobial drug, on changes in the fecal resistome and microbiome using shotgun metagenomic sequencing. Two pens of cattle were used, with all cattle in one pen receiving metaphylaxis treatment (800 mg subcutaneous tulathromycin) at arrival to the feedlot, and all cattle in the other pen remaining unexposed to parenteral antibiotics throughout the study period. Fecal samples were collected from 15 selected cattle in each group just prior to treatment (Day 1), and again 11 days later (Day 11). Shotgun sequencing was performed on isolated metagenomic DNA, and reads were aligned to a resistance and a taxonomic database to identify alignments to antimicrobial resistance (AMR) gene accessions and microbiome content. Overall, we identified AMR genes accessions encompassing 9 classes of AMR drugs and encoding 24 unique AMR mechanisms. Statistical analysis was used to identify differences in the resistome and microbiome between the untreated and treated groups at both timepoints, as well as over time. Based on composition and ordination analyses, the resistome and microbiome were not significantly different between the two groups on Day 1 or on Day 11. However, both the resistome and microbiome changed significantly between these two sampling dates. These results indicate that the transition into the feedlot?and associated changes in diet, geography, conspecific exposure, and environment?may exert a greater influence over the fecal resistome and microbiome of feedlot cattle than common metaphylactic antimicrobial drug treatment. MenosThe objective was to examine effects of treating commercial beef feedlot cattle with therapeutic doses of tulathromycin, a macrolide antimicrobial drug, on changes in the fecal resistome and microbiome using shotgun metagenomic sequencing. Two pens of cattle were used, with all cattle in one pen receiving metaphylaxis treatment (800 mg subcutaneous tulathromycin) at arrival to the feedlot, and all cattle in the other pen remaining unexposed to parenteral antibiotics throughout the study period. Fecal samples were collected from 15 selected cattle in each group just prior to treatment (Day 1), and again 11 days later (Day 11). Shotgun sequencing was performed on isolated metagenomic DNA, and reads were aligned to a resistance and a taxonomic database to identify alignments to antimicrobial resistance (AMR) gene accessions and microbiome content. Overall, we identified AMR genes accessions encompassing 9 classes of AMR drugs and encoding 24 unique AMR mechanisms. Statistical analysis was used to identify differences in the resistome and microbiome between the untreated and treated groups at both timepoints, as well as over time. Based on composition and ordination analyses, the resistome and microbiome were not significantly different between the two groups on Day 1 or on Day 11. However, both the resistome and microbiome changed significantly between these two sampling dates. These results indicate that the transition into the feedlot?and associated changes in diet, geography... Presentar Todo |
|
Palabras claves : |
METAGENOMICS; METAPHYLAXIS; MICROBIOME; RESISTOME; TULATHROMYCIN. |
|
Thesagro : |
BOVINOS; FEEDLOT. |
|
Asunto categoría : |
L73 Enfermedades de los animales |
|
URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/10933/1/fmicb-09-01715.pdf
|
|
Marc : |
LEADER 02931naa a2200409 a 4500
001 1058855
005 2019-10-11
008 2018 bl uuuu u00u1 u #d
024 7 $a10.3389/fmicb.2018.01715$2DOI
100 1 $aDOSTER, E.
245 $aInvestigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period.$h[electronic resource]
260 $c2018
300 $a14 p.
500 $aArticle history: Received: 14 April 2018; Accepted: 09 July 2018; Published: 30 July 2018. Open Access journal. https://doi.org/10.3389/fmicb.2018.01715
520 $aThe objective was to examine effects of treating commercial beef feedlot cattle with therapeutic doses of tulathromycin, a macrolide antimicrobial drug, on changes in the fecal resistome and microbiome using shotgun metagenomic sequencing. Two pens of cattle were used, with all cattle in one pen receiving metaphylaxis treatment (800 mg subcutaneous tulathromycin) at arrival to the feedlot, and all cattle in the other pen remaining unexposed to parenteral antibiotics throughout the study period. Fecal samples were collected from 15 selected cattle in each group just prior to treatment (Day 1), and again 11 days later (Day 11). Shotgun sequencing was performed on isolated metagenomic DNA, and reads were aligned to a resistance and a taxonomic database to identify alignments to antimicrobial resistance (AMR) gene accessions and microbiome content. Overall, we identified AMR genes accessions encompassing 9 classes of AMR drugs and encoding 24 unique AMR mechanisms. Statistical analysis was used to identify differences in the resistome and microbiome between the untreated and treated groups at both timepoints, as well as over time. Based on composition and ordination analyses, the resistome and microbiome were not significantly different between the two groups on Day 1 or on Day 11. However, both the resistome and microbiome changed significantly between these two sampling dates. These results indicate that the transition into the feedlot?and associated changes in diet, geography, conspecific exposure, and environment?may exert a greater influence over the fecal resistome and microbiome of feedlot cattle than common metaphylactic antimicrobial drug treatment.
650 $aBOVINOS
650 $aFEEDLOT
653 $aMETAGENOMICS
653 $aMETAPHYLAXIS
653 $aMICROBIOME
653 $aRESISTOME
653 $aTULATHROMYCIN
700 1 $aROVIRA, P.J.
700 1 $aNOYES, N.R.
700 1 $aBURGESS, B. A.
700 1 $aYANG, X.
700 1 $aWEINROTH, M.D.
700 1 $aLAKIN, S.M.
700 1 $aDEAN, C.J.
700 1 $aLINKE, L.
700 1 $aMAGNUSON, R.
700 1 $aJONES, K.I.
700 1 $aBOUCHER, C.
700 1 $aRUIZ, J.
700 1 $aBELK, K.E.
700 1 $aMORLEY, P.S.
773 $tFrontier in Microbiology, 2018, 9:1715.
Descargar
Esconder MarcPresentar Marc Completo |
|
Registro original : |
INIA Treinta y Tres (TT) |
|
|
Biblioteca
|
Identificación
|
Origen
|
Tipo / Formato
|
Clasificación
|
Cutter
|
Registro
|
Volumen
|
Estado
|
Volver
|
| Expresión de búsqueda válido. Check! |
|
|
